Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_02581 | Not Available | Positive | 2964903 - 2965373 | 17594.8 |
| sigma-70 family rna polymerase sigma factor | HMPREF1534_02582 | Not Available | Positive | 2965375 - 2965887 | 19986.1 |
| hypothetical protein | HMPREF1534_02583 | Not Available | Positive | 2965874 - 2966410 | 20530.5 |
| hypothetical protein | HMPREF1534_02584 | Not Available | Positive | 2966407 - 2966865 | 17392.1 |
| hypothetical protein | HMPREF1534_02585 | Not Available | Negative | 2967272 - 2968435 | 43941.5 |
| hypothetical protein | HMPREF1534_02586 | Not Available | Negative | 2968457 - 2969083 | 22070.1 |
| hypothetical protein | HMPREF1534_02587 | Not Available | Positive | 2969275 - 2971074 | 68613.8 |
| hypothetical protein | HMPREF1534_02588 | Not Available | Negative | 2971172 - 2971711 | 19956.2 |
| hypothetical protein | HMPREF1534_02589 | Not Available | Negative | 2971832 - 2972260 | 16081.4 |
| 50s ribosomal protein l17 | HMPREF1534_02590 | Not Available | Negative | 2972424 - 2972903 | 17690.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


