Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-phe | Not Available | Not Available | Positive | 2940587 - 2940662 | Not Available |
| Trna-pro | Not Available | Not Available | Positive | 2940789 - 2940861 | Not Available |
| hypothetical protein | HMPREF1534_02563 | Not Available | Negative | 2941182 - 2941532 | 13856.2 |
| hypothetical protein | HMPREF1534_02564 | Not Available | Negative | 2941673 - 2943499 | 67860.5 |
| hypothetical protein | HMPREF1534_02565 | Not Available | Negative | 2943754 - 2943954 | 7486.1 |
| hypothetical protein | HMPREF1534_02566 | Not Available | Negative | 2944592 - 2946961 | 87783.9 |
| hypothetical protein | HMPREF1534_02567 | Not Available | Negative | 2947014 - 2948195 | 44563.0 |
| hypothetical protein | HMPREF1534_02568 | Not Available | Positive | 2948493 - 2949665 | 42779.7 |
| hypothetical protein | HMPREF1534_02569 | Not Available | Positive | 2950091 - 2950195 | 4201.32 |
| susc/raga family tonb-linked outer membrane protein | HMPREF1534_02570 | Not Available | Positive | 2950223 - 2953582 | 124938.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


