Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_02511 | Not Available | Positive | 2878417 - 2881509 | 116813.0 |
| hypothetical protein | HMPREF1534_02512 | Not Available | Positive | 2882141 - 2882410 | 10757.1 |
| glycosyl hydrolase family 109 protein 2 | HMPREF1534_02513 | Not Available | Negative | 2882444 - 2883685 | 46980.2 |
| hypothetical protein | HMPREF1534_02514 | Not Available | Negative | 2883737 - 2884717 | 37090.0 |
| hypothetical protein | HMPREF1534_02515 | Not Available | Negative | 2884808 - 2885149 | 13168.3 |
| hypothetical protein | HMPREF1534_02516 | Not Available | Negative | 2885170 - 2886015 | 31864.2 |
| hypothetical protein | HMPREF1534_02517 | Not Available | Negative | 2886203 - 2888749 | 88727.9 |
| hypothetical protein | HMPREF1534_02518 | Not Available | Negative | 2888794 - 2889291 | 19824.9 |
| hypothetical protein | HMPREF1534_02519 | Not Available | Negative | 2889865 - 2890629 | 29003.1 |
| hypothetical protein | HMPREF1534_02520 | Not Available | Negative | 2890636 - 2890836 | 7582.14 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


