Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_02471 | Not Available | Negative | 2825118 - 2826467 | 50445.4 |
| hypothetical protein | HMPREF1534_02472 | Not Available | Positive | 2826698 - 2827339 | 23572.2 |
| rlua family pseudouridine synthase | HMPREF1534_02473 | Not Available | Positive | 2827361 - 2828434 | 40917.7 |
| d-alanine-d-alanine ligase | HMPREF1534_02474 | Not Available | Positive | 2828431 - 2829405 | 36197.3 |
| hypothetical protein | HMPREF1534_02475 | Not Available | Positive | 2829423 - 2830580 | 44579.0 |
| hypothetical protein | HMPREF1534_02476 | Not Available | Positive | 2830641 - 2831294 | 24616.4 |
| hypothetical protein | HMPREF1534_02477 | Not Available | Positive | 2831309 - 2831707 | 14994.2 |
| hypothetical protein | HMPREF1534_02478 | Not Available | Negative | 2831901 - 2832896 | 37274.6 |
| n-acetylornithine carbamoyltransferase | HMPREF1534_02479 | Not Available | Negative | 2833287 - 2834255 | 36544.8 |
| gamma-glutamyl phosphate reductase | HMPREF1534_02480 | Not Available | Negative | 2834298 - 2835548 | 44979.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


