Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna repair protein radc | HMPREF1534_02461 | Not Available | Negative | 2811252 - 2811941 | 25611.0 |
| hypothetical protein | HMPREF1534_02462 | Not Available | Negative | 2811941 - 2812930 | 37560.5 |
| elongation factor p | HMPREF1534_02463 | Not Available | Negative | 2813019 - 2813585 | 21112.5 |
| hypothetical protein | HMPREF1534_02464 | Not Available | Positive | 2813699 - 2813812 | 4437.43 |
| 50s ribosomal protein l34 | HMPREF1534_02465 | Not Available | Positive | 2813787 - 2813942 | 6019.34 |
| anaerobic sulfatase-maturating enzyme | HMPREF1534_02466 | Not Available | Negative | 2814000 - 2815229 | 47674.1 |
| hypothetical protein | HMPREF1534_02467 | Not Available | Negative | 2816082 - 2817947 | 69465.4 |
| hypothetical protein | HMPREF1534_02468 | Not Available | Negative | 2817959 - 2821033 | 117134.0 |
| hypothetical protein | HMPREF1534_02469 | Not Available | Negative | 2821054 - 2823366 | 87464.8 |
| hypothetical protein | HMPREF1534_02470 | Not Available | Negative | 2823373 - 2824956 | 62192.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


