Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_02441 | Not Available | Negative | 2784328 - 2785458 | 42171.9 |
| hypothetical protein | HMPREF1534_02442 | Not Available | Negative | 2785855 - 2786994 | 43828.2 |
| tigr00159 family protein | HMPREF1534_02443 | Not Available | Negative | 2787159 - 2787923 | 28485.6 |
| dihydropteroate synthase | HMPREF1534_02444 | Not Available | Negative | 2787956 - 2788816 | 31857.8 |
| udp-n-acetylmuramoyl-tripeptide-d-alanyl-d- alanine ligase | HMPREF1534_02445 | Not Available | Positive | 2788931 - 2790226 | 48273.7 |
| hypothetical protein | HMPREF1534_02446 | Not Available | Negative | 2790465 - 2791496 | 39116.9 |
| hypothetical protein | HMPREF1534_02447 | Not Available | Negative | 2791480 - 2792382 | 34547.5 |
| tigr00659 family protein | HMPREF1534_02448 | Not Available | Negative | 2792425 - 2793120 | 24355.0 |
| hypothetical protein | HMPREF1534_02449 | Not Available | Negative | 2793101 - 2793454 | 12992.8 |
| phosphate acetyltransferase | HMPREF1534_02450 | Not Available | Positive | 2793656 - 2794669 | 35477.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


