Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_02299 | Not Available | Negative | 2609133 - 2610221 | 40905.9 |
| hypothetical protein | HMPREF1534_02300 | Not Available | Negative | 2610395 - 2610982 | 22376.1 |
| hypothetical protein | HMPREF1534_02301 | Not Available | Negative | 2610987 - 2613533 | 95553.0 |
| hypothetical protein | HMPREF1534_02302 | Not Available | Negative | 2613553 - 2615184 | 62956.5 |
| susc/raga family tonb-linked outer membrane protein | HMPREF1534_02303 | Not Available | Negative | 2615192 - 2618422 | 119886.0 |
| hypothetical protein | HMPREF1534_02304 | Not Available | Negative | 2618657 - 2619670 | 38956.5 |
| rna polymerase sigma-70 factor | HMPREF1534_02305 | Not Available | Negative | 2619739 - 2620332 | 23744.9 |
| s-adenosylmethionine:trna ribosyltransferase-isomerase | HMPREF1534_02306 | Not Available | Positive | 2620977 - 2622245 | 48366.9 |
| urocanate hydratase | HMPREF1534_02307 | Not Available | Positive | 2622620 - 2624626 | 74823.6 |
| glutamate formiminotransferase | HMPREF1534_02308 | Not Available | Positive | 2624638 - 2625540 | 33512.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


