Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| efflux transporter, rnd family, mfp subunit | HMPREF1534_02289 | Not Available | Negative | 2599780 - 2600916 | 41317.5 |
| nodt family efflux transporter, outer membrane factor (omf) lipoprotein | HMPREF1534_02290 | Not Available | Negative | 2600962 - 2602353 | 51406.5 |
| hypothetical protein | HMPREF1534_02291 | Not Available | Negative | 2602450 - 2602992 | 19625.8 |
| hypothetical protein | HMPREF1534_02292 | Not Available | Positive | 2603182 - 2603592 | 15460.2 |
| hypothetical protein | HMPREF1534_02293 | Not Available | Positive | 2603722 - 2604615 | 31933.2 |
| hypothetical protein | HMPREF1534_02294 | Not Available | Positive | 2604621 - 2605640 | 36756.3 |
| four helix bundle protein | HMPREF1534_02295 | Not Available | Positive | 2605676 - 2606056 | 14337.4 |
| hypothetical protein | HMPREF1534_02296 | Not Available | Positive | 2606098 - 2607804 | 63893.0 |
| hypothetical protein | HMPREF1534_02297 | Not Available | Positive | 2607988 - 2608596 | 21712.1 |
| phenylacetic acid degradation protein paad | HMPREF1534_02298 | Not Available | Negative | 2608721 - 2609131 | 15061.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


