Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_02259 | Not Available | Negative | 2555669 - 2557012 | 51076.6 |
| isocitrate dehydrogenase, nadp-dependent | HMPREF1534_02260 | Not Available | Negative | 2557025 - 2558170 | 41592.9 |
| aconitate hydratase | HMPREF1534_02261 | Not Available | Negative | 2558174 - 2560417 | 81056.5 |
| hypothetical protein | HMPREF1534_02262 | Not Available | Positive | 2560589 - 2562484 | 73094.9 |
| hypothetical protein | HMPREF1534_02263 | Not Available | Negative | 2562980 - 2563144 | 6512.22 |
| hypothetical protein | HMPREF1534_02264 | Not Available | Positive | 2563209 - 2566112 | 108535.0 |
| hypothetical protein | HMPREF1534_02265 | Not Available | Positive | 2566492 - 2569455 | 113626.0 |
| hypothetical protein | HMPREF1534_02266 | Not Available | Positive | 2569610 - 2572279 | 101223.0 |
| hypothetical protein | HMPREF1534_02267 | Not Available | Positive | 2572452 - 2574158 | 64662.9 |
| hypothetical protein | HMPREF1534_02268 | Not Available | Negative | 2574090 - 2574221 | 5104.28 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


