Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-isopropylmalate synthase | HMPREF1534_02218 | Not Available | Negative | 2505524 - 2507020 | 54455.0 |
| hypothetical protein | HMPREF1534_02220 | Not Available | Negative | 2509511 - 2511067 | 60073.2 |
| hypothetical protein | HMPREF1534_02221 | Not Available | Negative | 2511073 - 2511927 | 32587.6 |
| rna polymerase sigma-70 factor | HMPREF1534_02222 | Not Available | Negative | 2511924 - 2512469 | 21533.0 |
| hypothetical protein | HMPREF1534_02223 | Not Available | Negative | 2512491 - 2513756 | 48704.5 |
| hypothetical protein | HMPREF1534_02224 | Not Available | Negative | 2514071 - 2515018 | 35318.2 |
| hypothetical protein | HMPREF1534_02225 | Not Available | Positive | 2515255 - 2517255 | 76799.2 |
| sua5/ycio/yrdc/ywlc family protein | HMPREF1534_02226 | Not Available | Positive | 2517262 - 2517873 | 22938.8 |
| hypothetical protein | HMPREF1534_02227 | Not Available | Positive | 2517924 - 2518757 | 30617.6 |
| hypothetical protein | HMPREF1534_02228 | Not Available | Negative | 2518925 - 2520160 | 46641.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


