Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_02198 | Not Available | Positive | 2480065 - 2480688 | 23495.1 |
| hypothetical protein | HMPREF1534_02199 | Not Available | Negative | 2480707 - 2481435 | 27976.3 |
| hypothetical protein | HMPREF1534_02200 | Not Available | Negative | 2481548 - 2482717 | 43862.6 |
| czca family heavy metal efflux pump | HMPREF1534_02201 | Not Available | Negative | 2482728 - 2485811 | 112468.0 |
| efflux transporter, rnd family, mfp subunit | HMPREF1534_02202 | Not Available | Negative | 2485823 - 2487082 | 45795.5 |
| hypothetical protein | HMPREF1534_02203 | Not Available | Negative | 2487178 - 2487606 | 16209.8 |
| hypothetical protein | HMPREF1534_02204 | Not Available | Negative | 2487762 - 2489774 | 75351.3 |
| hypothetical protein | HMPREF1534_02205 | Not Available | Negative | 2489830 - 2491767 | 73283.0 |
| adenylosuccinate synthetase | HMPREF1534_02206 | Not Available | Negative | 2492388 - 2493659 | 46983.0 |
| hypothetical protein | HMPREF1534_02207 | Not Available | Negative | 2493677 - 2494192 | 19782.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


