Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_02168 | Not Available | Positive | 2440829 - 2441086 | 10713.2 |
| hypothetical protein | HMPREF1534_02169 | Not Available | Positive | 2441169 - 2442011 | 31746.2 |
| hypothetical protein | HMPREF1534_02170 | Not Available | Positive | 2441986 - 2443170 | 45038.1 |
| phospho-2-dehydro-3-deoxyheptonate aldolase | HMPREF1534_02171 | Not Available | Positive | 2443190 - 2444257 | 39903.5 |
| hypothetical protein | HMPREF1534_02172 | Not Available | Positive | 2444262 - 2445035 | 29390.4 |
| hypothetical protein | HMPREF1534_02173 | Not Available | Negative | 2445103 - 2445693 | 21627.4 |
| hypothetical protein | HMPREF1534_02174 | Not Available | Negative | 2445693 - 2445974 | 10438.8 |
| hypothetical protein | HMPREF1534_02175 | Not Available | Negative | 2445976 - 2446947 | 34996.6 |
| hypothetical protein | HMPREF1534_02176 | Not Available | Positive | 2447259 - 2448278 | 38998.6 |
| hypothetical protein | HMPREF1534_02177 | Not Available | Positive | 2448735 - 2450345 | 61434.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


