Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_02158 | Not Available | Negative | 2426885 - 2428054 | 43541.2 |
| hypothetical protein | HMPREF1534_02159 | Not Available | Negative | 2428073 - 2428765 | 25528.8 |
| hypothetical protein | HMPREF1534_02160 | Not Available | Negative | 2428911 - 2429783 | 33905.0 |
| hypothetical protein | HMPREF1534_02161 | Not Available | Negative | 2429831 - 2432074 | 84649.6 |
| susc/raga family tonb-linked outer membrane protein | HMPREF1534_02162 | Not Available | Positive | 2432634 - 2435864 | 119998.0 |
| hypothetical protein | HMPREF1534_02163 | Not Available | Positive | 2435886 - 2437892 | 75638.9 |
| hypothetical protein | HMPREF1534_02164 | Not Available | Negative | 2438111 - 2439286 | 44578.6 |
| hypothetical protein | HMPREF1534_02165 | Not Available | Negative | 2439384 - 2439911 | 18913.9 |
| hypothetical protein | HMPREF1534_02166 | Not Available | Positive | 2440099 - 2440467 | 13945.1 |
| hypothetical protein | HMPREF1534_02167 | Not Available | Negative | 2440511 - 2440804 | 11391.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


