Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_02138 | Not Available | Positive | 2395129 - 2396247 | 42860.0 |
| hypothetical protein | HMPREF1534_02139 | Not Available | Negative | 2396581 - 2397621 | 39588.9 |
| fold protein | HMPREF1534_02140 | Not Available | Negative | 2398034 - 2398915 | 31608.7 |
| signal recognition particle protein | HMPREF1534_02141 | Not Available | Negative | 2399026 - 2400348 | 48854.6 |
| mate efflux family protein | HMPREF1534_02142 | Not Available | Negative | 2400454 - 2401776 | 48561.8 |
| hypothetical protein | HMPREF1534_02143 | Not Available | Positive | 2402002 - 2403321 | 47990.4 |
| hypothetical protein | HMPREF1534_02144 | Not Available | Negative | 2403391 - 2404716 | 48588.2 |
| hypothetical protein | HMPREF1534_02145 | Not Available | Negative | 2404700 - 2405674 | 35518.0 |
| phosphoglycerate kinase | HMPREF1534_02146 | Not Available | Positive | 2406099 - 2407352 | 44066.8 |
| hypothetical protein | HMPREF1534_02147 | Not Available | Negative | 2407268 - 2407528 | 9311.28 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


