Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_02128 | Not Available | Negative | 2386001 - 2387440 | 53976.9 |
| signal peptidase i | HMPREF1534_02129 | Not Available | Negative | 2387458 - 2388342 | 34058.6 |
| hypothetical protein | HMPREF1534_02130 | Not Available | Negative | 2388336 - 2390270 | 74702.4 |
| hypothetical protein | HMPREF1534_02131 | Not Available | Negative | 2390381 - 2390842 | 17472.5 |
| hypothetical protein | HMPREF1534_02132 | Not Available | Negative | 2390839 - 2391993 | 45657.7 |
| hypothetical protein | HMPREF1534_02133 | Not Available | Negative | 2392050 - 2392292 | 8842.5 |
| radical sam additional 4fe4s-binding spasm domain-containing protein | HMPREF1534_02134 | Not Available | Negative | 2392327 - 2393340 | 39518.7 |
| hypothetical protein | HMPREF1534_02135 | Not Available | Negative | 2393347 - 2393742 | 15102.7 |
| hypothetical protein | HMPREF1534_02136 | Not Available | Negative | 2393817 - 2394680 | 32781.4 |
| hypothetical protein | HMPREF1534_02137 | Not Available | Negative | 2394684 - 2394908 | 8075.81 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


