Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_02108 | Not Available | Negative | 2358146 - 2358937 | 30011.6 |
| phosphoglucosamine mutase | HMPREF1534_02109 | Not Available | Negative | 2359036 - 2360424 | 50384.5 |
| hypothetical protein | HMPREF1534_02110 | Not Available | Negative | 2360421 - 2360966 | 20510.1 |
| hypothetical protein | HMPREF1534_02111 | Not Available | Negative | 2361137 - 2362177 | 39342.3 |
| hypothetical protein | HMPREF1534_02112 | Not Available | Negative | 2362227 - 2364161 | 74074.9 |
| ribulose-phosphate 3-epimerase | HMPREF1534_02113 | Not Available | Negative | 2364298 - 2364951 | 23853.5 |
| hypothetical protein | HMPREF1534_02114 | Not Available | Negative | 2365049 - 2366320 | 48209.0 |
| sigma-70 family rna polymerase sigma factor | HMPREF1534_02115 | Not Available | Negative | 2366323 - 2366865 | 20828.0 |
| hypothetical protein | HMPREF1534_02116 | Not Available | Positive | 2367025 - 2367771 | 27557.8 |
| methionyl-trna formyltransferase | HMPREF1534_02117 | Not Available | Negative | 2367894 - 2368868 | 36503.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


