Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_02038 | Not Available | Negative | 2291769 - 2292509 | 28126.6 |
| hypothetical protein | HMPREF1534_02039 | Not Available | Negative | 2292475 - 2292585 | 4344.21 |
| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent | HMPREF1534_02040 | Not Available | Positive | 2292853 - 2295393 | 96087.1 |
| dihydroneopterin aldolase | HMPREF1534_02041 | Not Available | Positive | 2295544 - 2295912 | 13845.8 |
| methylglyoxal synthase | HMPREF1534_02042 | Not Available | Negative | 2295942 - 2296466 | 19875.9 |
| hypothetical protein | HMPREF1534_02043 | Not Available | Negative | 2296506 - 2297549 | 40089.2 |
| miab-like trna modifying enzyme | HMPREF1534_02044 | Not Available | Negative | 2297546 - 2298862 | 49207.0 |
| hypothetical protein | HMPREF1534_02045 | Not Available | Positive | 2298969 - 2300642 | 63165.3 |
| hypothetical protein | HMPREF1534_02046 | Not Available | Positive | 2300807 - 2301004 | 6469.44 |
| hypothetical protein | HMPREF1534_02047 | Not Available | Negative | 2301068 - 2301784 | 27762.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


