Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_01988 | Not Available | Negative | 2237624 - 2238067 | 17119.7 |
| hypothetical protein | HMPREF1534_01989 | Not Available | Negative | 2238125 - 2238994 | 32709.2 |
| hypothetical protein | HMPREF1534_01990 | Not Available | Negative | 2239018 - 2241090 | 80032.9 |
| hypothetical protein | HMPREF1534_01991 | Not Available | Negative | 2241205 - 2241612 | 15663.6 |
| hypothetical protein | HMPREF1534_01992 | Not Available | Negative | 2241615 - 2241833 | 8496.56 |
| hypothetical protein | HMPREF1534_01993 | Not Available | Negative | 2241830 - 2242015 | 6944.56 |
| hypothetical protein | HMPREF1534_01994 | Not Available | Positive | 2242166 - 2242822 | 25003.9 |
| hypothetical protein | HMPREF1534_01995 | Not Available | Positive | 2242988 - 2243236 | 9507.01 |
| thioredoxin | HMPREF1534_01996 | Not Available | Positive | 2243552 - 2243848 | 11338.9 |
| hypothetical protein | HMPREF1534_01997 | Not Available | Negative | 2243921 - 2244472 | 20596.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


