Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_01928 | Not Available | Negative | 2169675 - 2171348 | 63325.5 |
| hypothetical protein | HMPREF1534_01929 | Not Available | Negative | 2171486 - 2172094 | 23441.8 |
| hypothetical protein | HMPREF1534_01930 | Not Available | Negative | 2172104 - 2173702 | 59379.6 |
| hypothetical protein | HMPREF1534_01931 | Not Available | Negative | 2173771 - 2174100 | 12204.9 |
| hypothetical protein | HMPREF1534_01932 | Not Available | Negative | 2174136 - 2176637 | 91092.2 |
| hypothetical protein | HMPREF1534_01933 | Not Available | Negative | 2176868 - 2177191 | 12606.4 |
| mate efflux family protein | HMPREF1534_01934 | Not Available | Positive | 2177365 - 2178744 | 50840.6 |
| hypothetical protein | HMPREF1534_01935 | Not Available | Positive | 2178994 - 2179485 | 17903.7 |
| isochorismate synthase | HMPREF1534_01936 | Not Available | Positive | 2179482 - 2180624 | 43684.1 |
| 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase | HMPREF1534_01937 | Not Available | Positive | 2180752 - 2182428 | 63204.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


