Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-ser | Not Available | Not Available | Positive | 2152361 - 2152448 | Not Available |
| hypothetical protein | HMPREF1534_01909 | Not Available | Positive | 2152603 - 2155125 | 96039.4 |
| l-serine ammonia-lyase | HMPREF1534_01910 | Not Available | Positive | 2155282 - 2156490 | 43965.2 |
| hypothetical protein | HMPREF1534_01911 | Not Available | Negative | 2156532 - 2156642 | 4193.19 |
| hypothetical protein | HMPREF1534_01912 | Not Available | Negative | 2156745 - 2156870 | 4932.15 |
| hypothetical protein | HMPREF1534_01913 | Not Available | Negative | 2156972 - 2157412 | 16805.5 |
| hypothetical protein | HMPREF1534_01914 | Not Available | Negative | 2157506 - 2158075 | 21100.4 |
| hypothetical protein | HMPREF1534_01915 | Not Available | Negative | 2158281 - 2158967 | 25685.0 |
| hypothetical protein | HMPREF1534_01916 | Not Available | Negative | 2158972 - 2160801 | 67960.4 |
| pyridoxal-phosphate dependent trpb-like enzyme | HMPREF1534_01917 | Not Available | Positive | 2161009 - 2162373 | 50307.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


