Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_01888 | Not Available | Negative | 2133485 - 2134618 | 43286.5 |
| hypothetical protein | HMPREF1534_01889 | Not Available | Negative | 2134623 - 2134826 | 7613.54 |
| hypothetical protein | HMPREF1534_01890 | Not Available | Positive | 2135284 - 2136123 | 30704.0 |
| n-acetylmuramic acid 6-phosphate etherase | HMPREF1534_01891 | Not Available | Positive | 2136120 - 2136935 | 29718.3 |
| hypothetical protein | HMPREF1534_01892 | Not Available | Positive | 2136962 - 2137663 | 26339.7 |
| hypothetical protein | HMPREF1534_01893 | Not Available | Negative | 2137668 - 2139347 | 63414.3 |
| ribosomal protein s1 | HMPREF1534_01894 | Not Available | Positive | 2139548 - 2141344 | 66988.0 |
| hypothetical protein | HMPREF1534_01895 | Not Available | Positive | 2141593 - 2142039 | 16992.1 |
| ribonuclease z | HMPREF1534_01896 | Not Available | Positive | 2142110 - 2143024 | 34543.8 |
| sigma-70 family rna polymerase sigma factor | HMPREF1534_01897 | Not Available | Positive | 2143045 - 2143596 | 21711.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


