Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_01838 | Not Available | Negative | 2081772 - 2082062 | 11107.7 |
| dna replication and repair protein recf | HMPREF1534_01839 | Not Available | Negative | 2082059 - 2083174 | 42681.2 |
| hypothetical protein | HMPREF1534_01840 | Not Available | Positive | 2083325 - 2084002 | 24450.1 |
| 6,7-dimethyl-8-ribityllumazine synthase | HMPREF1534_01841 | Not Available | Positive | 2084121 - 2084618 | 17705.1 |
| Trna-tyr | Not Available | Not Available | Positive | 2084729 - 2084814 | Not Available |
| Trna-gly | Not Available | Not Available | Positive | 2084820 - 2084892 | Not Available |
| hypothetical protein | HMPREF1534_01844 | Not Available | Positive | 2085063 - 2085767 | 26778.7 |
| hypothetical protein | HMPREF1534_01845 | Not Available | Negative | 2085769 - 2087511 | 67061.4 |
| hypothetical protein | HMPREF1534_01846 | Not Available | Negative | 2087531 - 2088730 | 44914.3 |
| hypothetical protein | HMPREF1534_01847 | Not Available | Negative | 2088739 - 2089542 | 30441.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


