Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| amidophosphoribosyltransferase | HMPREF1534_01818 | Not Available | Negative | 2061751 - 2063157 | 52156.1 |
| hypothetical protein | HMPREF1534_01819 | Not Available | Negative | 2064042 - 2064941 | 35386.7 |
| hypothetical protein | HMPREF1534_01820 | Not Available | Negative | 2065262 - 2065450 | 6965.43 |
| protein crcb | HMPREF1534_01821 | Not Available | Positive | 2065731 - 2066096 | 13207.5 |
| enolase | HMPREF1534_01822 | Not Available | Positive | 2066159 - 2067454 | 46641.6 |
| hypothetical protein | HMPREF1534_01823 | Not Available | Negative | 2067578 - 2069989 | 92138.5 |
| Trna-thr | Not Available | Not Available | Positive | 2070063 - 2070136 | Not Available |
| hypothetical protein | HMPREF1534_01825 | Not Available | Positive | 2070412 - 2070945 | 20495.8 |
| hypothetical protein | HMPREF1534_01826 | Not Available | Positive | 2070951 - 2071904 | 36420.1 |
| hypothetical protein | HMPREF1534_01827 | Not Available | Positive | 2071907 - 2072455 | 20433.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


