Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_01808 | Not Available | Negative | 2052013 - 2053026 | 39067.4 |
| preprotein translocase, yajc subunit | HMPREF1534_01809 | Not Available | Negative | 2053041 - 2053352 | 11458.1 |
| transcription antitermination factor nusb | HMPREF1534_01810 | Not Available | Negative | 2053410 - 2054336 | 36207.4 |
| hypothetical protein | HMPREF1534_01811 | Not Available | Positive | 2054530 - 2054916 | 14838.4 |
| 50s ribosomal protein l25 | HMPREF1534_01812 | Not Available | Positive | 2055097 - 2055693 | 21528.4 |
| peptidyl-trna hydrolase | HMPREF1534_01813 | Not Available | Positive | 2055718 - 2056281 | 20746.2 |
| hypothetical protein | HMPREF1534_01814 | Not Available | Positive | 2056281 - 2056709 | 16333.5 |
| hypothetical protein | HMPREF1534_01815 | Not Available | Negative | 2056839 - 2059106 | 84325.7 |
| aminomethyltransferase | HMPREF1534_01816 | Not Available | Negative | 2059300 - 2060385 | 39586.5 |
| peptidase t | HMPREF1534_01817 | Not Available | Negative | 2060425 - 2061645 | 45251.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


