Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_01798 | Not Available | Negative | 2039771 - 2041414 | 61411.8 |
| hypothetical protein | HMPREF1534_01799 | Not Available | Negative | 2041452 - 2043119 | 62564.7 |
| alanine dehydrogenase | HMPREF1534_01800 | Not Available | Positive | 2043317 - 2044408 | 38826.4 |
| hypothetical protein | HMPREF1534_01801 | Not Available | Positive | 2044697 - 2045182 | 17401.8 |
| hypothetical protein | HMPREF1534_01802 | Not Available | Negative | 2045370 - 2046356 | 35171.3 |
| hypothetical protein | HMPREF1534_01803 | Not Available | Negative | 2046447 - 2047343 | 34450.0 |
| hypothetical protein | HMPREF1534_01804 | Not Available | Negative | 2047357 - 2047938 | 21358.6 |
| chaperone clpb | HMPREF1534_01805 | Not Available | Positive | 2048237 - 2050825 | 97239.7 |
| hypothetical protein | HMPREF1534_01806 | Not Available | Negative | 2050915 - 2051355 | 16003.2 |
| dephospho-coa kinase | HMPREF1534_01807 | Not Available | Negative | 2051424 - 2052020 | 22271.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


