Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_01788 | Not Available | Positive | 2026569 - 2026856 | 11206.4 |
| competence protein comea helix-hairpin-helix repeat region | HMPREF1534_01789 | Not Available | Positive | 2027165 - 2029288 | 79578.6 |
| hypothetical protein | HMPREF1534_01790 | Not Available | Positive | 2029304 - 2030104 | 29784.7 |
| aspt/yide/ybjl antiporter duplication domain-containing protein | HMPREF1534_01791 | Not Available | Positive | 2030134 - 2031795 | 59366.8 |
| fructose-1,6-bisphosphatase class 3 | HMPREF1534_01792 | Not Available | Positive | 2031805 - 2033802 | 76566.6 |
| aspartate 1-decarboxylase | HMPREF1534_01793 | Not Available | Negative | 2033928 - 2034278 | 12778.6 |
| pantothenate synthetase | HMPREF1534_01794 | Not Available | Negative | 2034278 - 2035129 | 31994.5 |
| hypothetical protein | HMPREF1534_01795 | Not Available | Positive | 2035402 - 2036226 | 31907.9 |
| hypothetical protein | HMPREF1534_01796 | Not Available | Positive | 2036246 - 2037631 | 52154.4 |
| hypothetical protein | HMPREF1534_01797 | Not Available | Negative | 2037834 - 2039579 | 64582.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


