Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_01768 | Not Available | Positive | 2001168 - 2001605 | 16486.4 |
| hypothetical protein | HMPREF1534_01769 | Not Available | Positive | 2001607 - 2002665 | 40905.3 |
| hypothetical protein | HMPREF1534_01770 | Not Available | Positive | 2002676 - 2003203 | 19534.9 |
| hypothetical protein | HMPREF1534_01771 | Not Available | Positive | 2003200 - 2004108 | 36044.7 |
| hypothetical protein | HMPREF1534_01772 | Not Available | Positive | 2004071 - 2005174 | 42256.6 |
| wecb/taga/cpsf family glycosyltransferase | HMPREF1534_01773 | Not Available | Positive | 2005171 - 2005926 | 29044.8 |
| mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | HMPREF1534_01774 | Not Available | Positive | 2006121 - 2007173 | 39614.8 |
| hypothetical protein | HMPREF1534_01775 | Not Available | Positive | 2007320 - 2008804 | 55564.3 |
| hypothetical protein | HMPREF1534_01776 | Not Available | Positive | 2008801 - 2009259 | 17264.9 |
| hypothetical protein | HMPREF1534_01777 | Not Available | Negative | 2009541 - 2010896 | 49327.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


