Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nodt family efflux transporter, outer membrane factor (omf) lipoprotein | HMPREF1534_01748 | Not Available | Positive | 1976636 - 1978009 | 51452.7 |
| hypothetical protein | HMPREF1534_01749 | Not Available | Negative | 1978038 - 1980260 | 83848.1 |
| aspt/yide/ybjl antiporter duplication domain-containing protein | HMPREF1534_01750 | Not Available | Negative | 1980281 - 1981879 | 56551.6 |
| hypothetical protein | HMPREF1534_01751 | Not Available | Positive | 1981927 - 1982043 | 4721.89 |
| undecaprenyl-phosphate glucose phosphotransferase | HMPREF1534_01752 | Not Available | Positive | 1982264 - 1983667 | 54372.6 |
| hypothetical protein | HMPREF1534_01753 | Not Available | Positive | 1983702 - 1984493 | 29043.2 |
| capsular exopolysaccharide family protein | HMPREF1534_01754 | Not Available | Positive | 1984511 - 1986898 | 89021.6 |
| hypothetical protein | HMPREF1534_01755 | Not Available | Negative | 1987018 - 1987464 | 17088.2 |
| hypothetical protein | HMPREF1534_01756 | Not Available | Negative | 1987760 - 1988209 | 16064.2 |
| hypothetical protein | HMPREF1534_01757 | Not Available | Negative | 1988264 - 1988446 | 6873.24 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


