Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_01707 | Not Available | Negative | 1931629 - 1932540 | 34904.4 |
| hypothetical protein | HMPREF1534_01708 | Not Available | Negative | 1932530 - 1935421 | 111749.0 |
| hypothetical protein | HMPREF1534_01709 | Not Available | Negative | 1935396 - 1936913 | 58418.2 |
| dna (cytosine-5-)-methyltransferase | HMPREF1534_01710 | Not Available | Negative | 1936916 - 1938022 | 42044.9 |
| hypothetical protein | HMPREF1534_01711 | Not Available | Negative | 1938012 - 1938242 | 8815.68 |
| hypothetical protein | HMPREF1534_01712 | Not Available | Positive | 1938361 - 1938765 | 15355.0 |
| hypothetical protein | HMPREF1534_01713 | Not Available | Negative | 1938569 - 1939831 | 47743.6 |
| hypothetical protein | HMPREF1534_01714 | Not Available | Negative | 1939835 - 1940155 | 11909.9 |
| hypothetical protein | HMPREF1534_01715 | Not Available | Positive | 1941008 - 1941688 | 26034.8 |
| hypothetical protein | HMPREF1534_01716 | Not Available | Positive | 1942264 - 1942632 | 14084.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


