Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_01697 | Not Available | Negative | 1918976 - 1919788 | 30472.4 |
| hypothetical protein | HMPREF1534_01698 | Not Available | Negative | 1919792 - 1923040 | 124485.0 |
| hypothetical protein | HMPREF1534_01699 | Not Available | Negative | 1923015 - 1923245 | 8721.5 |
| hypothetical protein | HMPREF1534_01700 | Not Available | Negative | 1923835 - 1924857 | 39324.8 |
| dna mismatch endonuclease vsr | HMPREF1534_01701 | Not Available | Negative | 1924885 - 1925394 | 20422.8 |
| hypothetical protein | HMPREF1534_01702 | Not Available | Negative | 1925423 - 1925686 | 10369.5 |
| hypothetical protein | HMPREF1534_01703 | Not Available | Negative | 1925731 - 1926690 | 36478.5 |
| hypothetical protein | HMPREF1534_01704 | Not Available | Negative | 1926694 - 1928499 | 69355.8 |
| hypothetical protein | HMPREF1534_01705 | Not Available | Negative | 1928496 - 1929488 | 38336.1 |
| hypothetical protein | HMPREF1534_01706 | Not Available | Negative | 1929499 - 1931616 | 80887.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


