Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_01677 | Not Available | Positive | 1899849 - 1900211 | 14272.5 |
| hypothetical protein | HMPREF1534_01678 | Not Available | Positive | 1900201 - 1900629 | 16618.9 |
| hypothetical protein | HMPREF1534_01679 | Not Available | Positive | 1900641 - 1901138 | 19655.8 |
| hypothetical protein | HMPREF1534_01680 | Not Available | Positive | 1901215 - 1902135 | 34669.1 |
| hypothetical protein | HMPREF1534_01681 | Not Available | Positive | 1902462 - 1903613 | 44121.3 |
| hypothetical protein | HMPREF1534_01682 | Not Available | Positive | 1903626 - 1904783 | 44313.4 |
| hypothetical protein | HMPREF1534_01683 | Not Available | Positive | 1904811 - 1905446 | 24899.4 |
| hypothetical protein | HMPREF1534_01684 | Not Available | Positive | 1905443 - 1905844 | 15350.7 |
| excisionase family dna binding domain-containing protein | HMPREF1534_01685 | Not Available | Positive | 1906080 - 1906316 | 9309.47 |
| hypothetical protein | HMPREF1534_01686 | Not Available | Positive | 1906325 - 1907041 | 27647.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


