Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_01647 | Not Available | Negative | 1873136 - 1873243 | 4374.55 |
| hypothetical protein | HMPREF1534_01648 | Not Available | Negative | 1873329 - 1874777 | 52895.8 |
| hypothetical protein | HMPREF1534_01649 | Not Available | Negative | 1874831 - 1876285 | 55532.9 |
| hypothetical protein | HMPREF1534_01650 | Not Available | Negative | 1876571 - 1877644 | 40647.7 |
| excisionase family dna binding domain-containing protein | HMPREF1534_01651 | Not Available | Negative | 1877647 - 1878024 | 14528.4 |
| hypothetical protein | HMPREF1534_01652 | Not Available | Negative | 1878146 - 1878922 | 30167.7 |
| hypothetical protein | HMPREF1534_01653 | Not Available | Negative | 1879097 - 1880209 | 43778.6 |
| excisionase family dna binding domain-containing protein | HMPREF1534_01654 | Not Available | Negative | 1880325 - 1881203 | 34993.2 |
| hypothetical protein | HMPREF1534_01655 | Not Available | Negative | 1882542 - 1883615 | 40681.8 |
| hypothetical protein | HMPREF1534_01656 | Not Available | Negative | 1883605 - 1884414 | 31047.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


