Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_01617 | Not Available | Negative | 1838527 - 1839264 | 28039.1 |
| hypothetical protein | HMPREF1534_01618 | Not Available | Negative | 1839344 - 1840339 | 38683.5 |
| hypothetical protein | HMPREF1534_01619 | Not Available | Negative | 1840323 - 1841297 | 37197.6 |
| hypothetical protein | HMPREF1534_01620 | Not Available | Negative | 1841294 - 1842580 | 49040.6 |
| nucleotide sugar dehydrogenase | HMPREF1534_01621 | Not Available | Negative | 1842583 - 1843827 | 46608.4 |
| hypothetical protein | HMPREF1534_01622 | Not Available | Negative | 1843830 - 1844057 | 8707.64 |
| hypothetical protein | HMPREF1534_01623 | Not Available | Negative | 1844296 - 1844973 | 24939.3 |
| hypothetical protein | HMPREF1534_01624 | Not Available | Positive | 1845244 - 1845996 | 29016.2 |
| hypothetical protein | HMPREF1534_01625 | Not Available | Positive | 1846029 - 1846238 | 8279.28 |
| hypothetical protein | HMPREF1534_01626 | Not Available | Positive | 1846263 - 1847900 | 61398.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


