Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_01567 | Not Available | Negative | 1788357 - 1788962 | 22984.4 |
| hypothetical protein | HMPREF1534_01568 | Not Available | Negative | 1789004 - 1789579 | 22167.3 |
| hypothetical protein | HMPREF1534_01569 | Not Available | Positive | 1789683 - 1792148 | 91835.9 |
| hypothetical protein | HMPREF1534_01570 | Not Available | Positive | 1792165 - 1792782 | 23044.5 |
| thioredoxin-disulfide reductase | HMPREF1534_01571 | Not Available | Positive | 1792811 - 1793758 | 33970.5 |
| hypothetical protein | HMPREF1534_01572 | Not Available | Positive | 1793787 - 1796606 | 106678.0 |
| hypothetical protein | HMPREF1534_01573 | Not Available | Positive | 1796619 - 1798100 | 57292.4 |
| hypothetical protein | HMPREF1534_01574 | Not Available | Positive | 1798113 - 1798823 | 26677.9 |
| hypothetical protein | HMPREF1534_01575 | Not Available | Positive | 1798828 - 1799352 | 19907.2 |
| had hydrolase, family ia | HMPREF1534_01576 | Not Available | Positive | 1799404 - 1801224 | 70511.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


