Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_01527 | Not Available | Negative | 1738821 - 1740290 | 55499.8 |
| hypothetical protein | HMPREF1534_01528 | Not Available | Negative | 1740372 - 1742576 | 85929.5 |
| hypothetical protein | HMPREF1534_01529 | Not Available | Positive | 1742690 - 1744258 | 60244.0 |
| glutamine synthetase | HMPREF1534_01530 | Not Available | Positive | 1744598 - 1746787 | 82896.0 |
| hypothetical protein | HMPREF1534_01531 | Not Available | Positive | 1746899 - 1747600 | 26547.4 |
| hypothetical protein | HMPREF1534_01532 | Not Available | Positive | 1748407 - 1748559 | 5596.01 |
| hypothetical protein | HMPREF1534_01533 | Not Available | Positive | 1748590 - 1749102 | 19754.4 |
| 3-deoxy-8-phosphooctulonate synthase | HMPREF1534_01534 | Not Available | Negative | 1749346 - 1750146 | 29007.3 |
| yegs//bmru family lipid kinase | HMPREF1534_01535 | Not Available | Negative | 1750195 - 1751124 | 35219.8 |
| trna dimethylallyltransferase 2 | HMPREF1534_01536 | Not Available | Negative | 1751130 - 1752053 | 35490.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


