Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 8-amino-7-oxononanoate synthase | HMPREF1534_01517 | Not Available | Negative | 1726531 - 1727691 | 43242.9 |
| biotin synthase | HMPREF1534_01518 | Not Available | Negative | 1727733 - 1728998 | 47353.6 |
| biotin synthase | HMPREF1534_01519 | Not Available | Negative | 1729009 - 1729965 | 35189.4 |
| hypothetical protein | HMPREF1534_01520 | Not Available | Negative | 1729980 - 1730351 | 14128.6 |
| hypothetical protein | HMPREF1534_01521 | Not Available | Negative | 1730494 - 1731900 | 53388.9 |
| hypothetical protein | HMPREF1534_01522 | Not Available | Negative | 1731918 - 1733186 | 48073.8 |
| hypothetical protein | HMPREF1534_01523 | Not Available | Negative | 1733201 - 1735141 | 74958.3 |
| hypothetical protein | HMPREF1534_01524 | Not Available | Negative | 1735399 - 1736649 | 46647.6 |
| hypothetical protein | HMPREF1534_01525 | Not Available | Negative | 1736633 - 1737820 | 44252.8 |
| hypothetical protein | HMPREF1534_01526 | Not Available | Negative | 1737817 - 1738812 | 37082.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


