Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aspartate kinase | HMPREF1534_01487 | Not Available | Positive | 1692449 - 1693768 | 49226.0 |
| diaminopimelate decarboxylase | HMPREF1534_01488 | Not Available | Positive | 1693879 - 1695039 | 42879.4 |
| hypothetical protein | HMPREF1534_01489 | Not Available | Negative | 1695157 - 1695663 | 19564.3 |
| hypothetical protein | HMPREF1534_01490 | Not Available | Positive | 1695861 - 1697018 | 44604.4 |
| hypothetical protein | HMPREF1534_01491 | Not Available | Positive | 1697066 - 1697341 | 10346.4 |
| hypothetical protein | HMPREF1534_01492 | Not Available | Positive | 1697650 - 1698960 | 51357.1 |
| hypothetical protein | HMPREF1534_01493 | Not Available | Negative | 1699564 - 1699995 | 16571.7 |
| hypothetical protein | HMPREF1534_01494 | Not Available | Negative | 1700031 - 1702496 | 89606.4 |
| hypothetical protein | HMPREF1534_01495 | Not Available | Negative | 1703267 - 1704514 | 46842.6 |
| hypothetical protein | HMPREF1534_01496 | Not Available | Negative | 1704516 - 1705718 | 44928.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


