Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_01467 | Not Available | Positive | 1674260 - 1674436 | 6554.98 |
| hypothetical protein | HMPREF1534_01468 | Not Available | Positive | 1674657 - 1679051 | 169779.0 |
| hypothetical protein | HMPREF1534_01469 | Not Available | Positive | 1679084 - 1679812 | 27593.6 |
| hypothetical protein | HMPREF1534_01470 | Not Available | Positive | 1679802 - 1680509 | 26728.5 |
| Trna-arg | Not Available | Not Available | Positive | 1680587 - 1680663 | Not Available |
| hypothetical protein | HMPREF1534_01472 | Not Available | Positive | 1680848 - 1680959 | 4169.05 |
| Trna-lys | Not Available | Not Available | Positive | 1681072 - 1681144 | Not Available |
| hypothetical protein | HMPREF1534_01474 | Not Available | Negative | 1681261 - 1682334 | 39094.0 |
| methionine-r-sulfoxide reductase | HMPREF1534_01475 | Not Available | Positive | 1682509 - 1683468 | 36177.5 |
| hypothetical protein | HMPREF1534_01476 | Not Available | Positive | 1683565 - 1684188 | 23567.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


