Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_01456 | Not Available | Negative | 1664709 - 1665299 | 21678.6 |
| hypothetical protein | HMPREF1534_01457 | Not Available | Positive | 1665383 - 1665505 | 4877.98 |
| hypothetical protein | HMPREF1534_01458 | Not Available | Positive | 1665640 - 1665870 | 9037.95 |
| hypothetical protein | HMPREF1534_01460 | Not Available | Positive | 1667755 - 1667901 | 5414.76 |
| hypothetical protein | HMPREF1534_01461 | Not Available | Positive | 1667902 - 1668009 | 4073.32 |
| hypothetical protein | HMPREF1534_01462 | Not Available | Positive | 1668029 - 1669372 | 51016.1 |
| hypothetical protein | HMPREF1534_01463 | Not Available | Positive | 1670390 - 1670755 | 13858.7 |
| hypothetical protein | HMPREF1534_01464 | Not Available | Positive | 1670721 - 1671713 | 38765.2 |
| hypothetical protein | HMPREF1534_01465 | Not Available | Negative | 1671693 - 1672343 | 25275.6 |
| lactate permease (lctp) family transporter | HMPREF1534_01466 | Not Available | Positive | 1672660 - 1674159 | 53365.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


