Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_01406 | Not Available | Negative | 1600528 - 1602936 | 91596.4 |
| efflux transporter, rnd family, mfp subunit | HMPREF1534_01407 | Not Available | Negative | 1602946 - 1604193 | 47920.9 |
| hypothetical protein | HMPREF1534_01408 | Not Available | Negative | 1604206 - 1605552 | 51922.7 |
| hypothetical protein | HMPREF1534_01409 | Not Available | Positive | 1605844 - 1607178 | 50160.0 |
| hypothetical protein | HMPREF1534_01410 | Not Available | Positive | 1607185 - 1608495 | 49444.4 |
| hypothetical protein | HMPREF1534_01411 | Not Available | Negative | 1608592 - 1610124 | 59224.8 |
| hypothetical protein | HMPREF1534_01412 | Not Available | Positive | 1610249 - 1612318 | 77190.6 |
| hypothetical protein | HMPREF1534_01413 | Not Available | Positive | 1612388 - 1613890 | 55804.7 |
| hypothetical protein | HMPREF1534_01414 | Not Available | Negative | 1614013 - 1615632 | 58780.7 |
| Trna-gly | Not Available | Not Available | Positive | 1615809 - 1615884 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


