Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_01386 | Not Available | Positive | 1574881 - 1575960 | 41648.1 |
| hypothetical protein | HMPREF1534_01387 | Not Available | Positive | 1576136 - 1577440 | 46720.6 |
| octanoyltransferase | HMPREF1534_01388 | Not Available | Negative | 1577464 - 1578558 | 41103.0 |
| hypothetical protein | HMPREF1534_01389 | Not Available | Positive | 1578623 - 1579273 | 25225.0 |
| hypothetical protein | HMPREF1534_01390 | Not Available | Positive | 1579363 - 1579920 | 20771.8 |
| heavy metal translocating p-type atpase | HMPREF1534_01391 | Not Available | Negative | 1580055 - 1582268 | 80764.0 |
| hypothetical protein | HMPREF1534_01392 | Not Available | Positive | 1582464 - 1583306 | 31858.6 |
| ribosomal rna small subunit methyltransferase g | HMPREF1534_01393 | Not Available | Positive | 1583315 - 1583941 | 23519.6 |
| hypothetical protein | HMPREF1534_01394 | Not Available | Positive | 1583963 - 1584601 | 23952.5 |
| glycine dehydrogenase | HMPREF1534_01395 | Not Available | Positive | 1584714 - 1587563 | 105128.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


