Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_01376 | Not Available | Negative | 1563185 - 1564573 | 53466.5 |
| hypothetical protein | HMPREF1534_01377 | Not Available | Positive | 1564692 - 1564802 | 4190.26 |
| ctp synthase | HMPREF1534_01378 | Not Available | Positive | 1564835 - 1566436 | 60076.3 |
| inner membrane protein oxaa | HMPREF1534_01379 | Not Available | Positive | 1566475 - 1568337 | 70538.2 |
| hypothetical protein | HMPREF1534_01380 | Not Available | Negative | 1568576 - 1568689 | 4265.4 |
| hypothetical protein | HMPREF1534_01381 | Not Available | Positive | 1568725 - 1569357 | 23752.4 |
| hypothetical protein | HMPREF1534_01382 | Not Available | Positive | 1569497 - 1571677 | 82110.6 |
| hypothetical protein | HMPREF1534_01383 | Not Available | Negative | 1571889 - 1572692 | 29370.1 |
| 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase | HMPREF1534_01384 | Not Available | Negative | 1572906 - 1573580 | 24090.4 |
| hypothetical protein | HMPREF1534_01385 | Not Available | Negative | 1573614 - 1574636 | 37046.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


