Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_01366 | Not Available | Positive | 1552380 - 1552970 | 22973.4 |
| serine hydroxymethyltransferase | HMPREF1534_01367 | Not Available | Positive | 1553081 - 1554361 | 46987.8 |
| mate efflux family protein | HMPREF1534_01368 | Not Available | Positive | 1554775 - 1556118 | 49226.1 |
| hypothetical protein | HMPREF1534_01369 | Not Available | Positive | 1556168 - 1556887 | 24493.0 |
| monofunctional biosynthetic peptidoglycan transglycosylase | HMPREF1534_01370 | Not Available | Positive | 1556968 - 1557678 | 27312.7 |
| hypothetical protein | HMPREF1534_01371 | Not Available | Negative | 1557686 - 1558516 | 31150.7 |
| hypothetical protein | HMPREF1534_01372 | Not Available | Negative | 1558628 - 1560403 | 66615.7 |
| sigma-70 family rna polymerase sigma factor | HMPREF1534_01373 | Not Available | Negative | 1560592 - 1561095 | 19761.6 |
| hypothetical protein | HMPREF1534_01374 | Not Available | Negative | 1561260 - 1561868 | 21908.3 |
| udp-n-acetylglucosamine 2-epimerase | HMPREF1534_01375 | Not Available | Positive | 1561951 - 1563039 | 40131.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


