Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna ligase | HMPREF1534_01336 | Not Available | Negative | 1522548 - 1524545 | 75299.7 |
| trna (guanine-n(1)-)-methyltransferase | HMPREF1534_01337 | Not Available | Positive | 1524645 - 1525319 | 25336.5 |
| hypothetical protein | HMPREF1534_01338 | Not Available | Negative | 1525407 - 1525529 | 4940.98 |
| dihydroorotate dehydrogenase | HMPREF1534_01339 | Not Available | Negative | 1525685 - 1526596 | 32304.4 |
| hypothetical protein | HMPREF1534_01340 | Not Available | Negative | 1526584 - 1527363 | 28275.9 |
| hypothetical protein | HMPREF1534_01341 | Not Available | Negative | 1527457 - 1527870 | 15491.2 |
| dna polymerase iii, delta subunit | HMPREF1534_01342 | Not Available | Negative | 1528989 - 1530005 | 38745.1 |
| hypothetical protein | HMPREF1534_01343 | Not Available | Negative | 1530017 - 1530793 | 29094.4 |
| hypothetical protein | HMPREF1534_01344 | Not Available | Positive | 1530851 - 1531300 | 17399.1 |
| hypothetical protein | HMPREF1534_01345 | Not Available | Negative | 1531404 - 1532195 | 30423.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


