Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| methionine aminopeptidase, type i | HMPREF1534_01306 | Not Available | Positive | 1490498 - 1491352 | 31793.2 |
| glycoprotease/kae1 family metallohydrolase | HMPREF1534_01307 | Not Available | Positive | 1491377 - 1492396 | 36980.4 |
| competence/damage-inducible protein cina domain protain | HMPREF1534_01308 | Not Available | Positive | 1492420 - 1492920 | 17612.9 |
| 50s ribosomal protein l28 | HMPREF1534_01309 | Not Available | Positive | 1493025 - 1493285 | 9789.04 |
| 50s ribosomal protein l33 | HMPREF1534_01310 | Not Available | Positive | 1493306 - 1493494 | 7205.97 |
| hypothetical protein | HMPREF1534_01311 | Not Available | Positive | 1493504 - 1493659 | 5827.19 |
| signal recognition particle-docking protein ftsy | HMPREF1534_01312 | Not Available | Positive | 1493833 - 1494795 | 34901.1 |
| ribosomal protein s12 methylthiotransferase rimo | HMPREF1534_01313 | Not Available | Positive | 1494796 - 1496094 | 50005.0 |
| hypothetical protein | HMPREF1534_01314 | Not Available | Positive | 1496168 - 1496440 | 10348.7 |
| hypothetical protein | HMPREF1534_01315 | Not Available | Positive | 1496472 - 1497767 | 47924.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


