Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| crispr-associated helicase cas3 | HMPREF1534_01296 | Not Available | Positive | 1478728 - 1480953 | 84553.9 |
| crispr-associated protein cas5, subtype i-c/dvulg | HMPREF1534_01297 | Not Available | Positive | 1480998 - 1481699 | 27638.2 |
| crispr-associated protein cas8c/csd1, subtype i-c/dvulg | HMPREF1534_01298 | Not Available | Positive | 1481696 - 1483447 | 66419.1 |
| crispr-associated protein cas7/csd2, subtype i-c/dvulg | HMPREF1534_01299 | Not Available | Positive | 1483473 - 1484351 | 32151.5 |
| crispr-associated protein cas4 | HMPREF1534_01300 | Not Available | Positive | 1484363 - 1485028 | 25866.1 |
| crispr-associated endonuclease cas1, subtype i-c/dvulg | HMPREF1534_01301 | Not Available | Positive | 1485025 - 1486038 | 38356.7 |
| crispr-associated endoribonuclease cas2 | HMPREF1534_01302 | Not Available | Positive | 1486048 - 1486338 | 11122.4 |
| hypothetical protein | HMPREF1534_01303 | Not Available | Positive | 1487294 - 1487395 | 3685.35 |
| hypothetical protein | HMPREF1534_01304 | Not Available | Negative | 1487490 - 1487870 | 14967.9 |
| hypothetical protein | HMPREF1534_01305 | Not Available | Positive | 1488626 - 1490344 | 64616.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


