Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_01256 | Not Available | Negative | 1434017 - 1435561 | 57160.1 |
| hypothetical protein | HMPREF1534_01257 | Not Available | Negative | 1435588 - 1436931 | 50476.1 |
| glycine betaine/l-proline transport atp binding subunit | HMPREF1534_01258 | Not Available | Positive | 1437103 - 1438329 | 45701.3 |
| hypothetical protein | HMPREF1534_01259 | Not Available | Positive | 1438326 - 1439150 | 29634.7 |
| hypothetical protein | HMPREF1534_01260 | Not Available | Positive | 1439153 - 1439992 | 31669.4 |
| hypothetical protein | HMPREF1534_01261 | Not Available | Positive | 1440121 - 1441041 | 34567.4 |
| hypothetical protein | HMPREF1534_01262 | Not Available | Positive | 1441034 - 1441582 | 20130.5 |
| hypothetical protein | HMPREF1534_01263 | Not Available | Negative | 1441633 - 1441851 | 8171.7 |
| hypothetical protein | HMPREF1534_01264 | Not Available | Positive | 1442118 - 1442582 | 18470.5 |
| hypothetical protein | HMPREF1534_01265 | Not Available | Negative | 1442658 - 1442963 | 11154.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


