Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha,alpha-trehalose-phosphate synthase (udp-forming) | HMPREF1534_01246 | Not Available | Negative | 1422279 - 1424531 | 86541.3 |
| hypothetical protein | HMPREF1534_01247 | Not Available | Positive | 1424892 - 1426238 | 50781.7 |
| hypothetical protein | HMPREF1534_01248 | Not Available | Positive | 1426550 - 1427185 | 24088.7 |
| hypothetical protein | HMPREF1534_01249 | Not Available | Positive | 1427222 - 1427911 | 26398.0 |
| hypothetical protein | HMPREF1534_01250 | Not Available | Negative | 1428180 - 1428881 | 25515.1 |
| hypothetical protein | HMPREF1534_01251 | Not Available | Negative | 1429011 - 1429124 | 4202.37 |
| potassium-transporting atpase c chain | HMPREF1534_01252 | Not Available | Negative | 1429155 - 1429724 | 20542.6 |
| k+-transporting atpase, b subunit | HMPREF1534_01253 | Not Available | Negative | 1429738 - 1431771 | 72462.0 |
| potassium-transporting atpase a chain | HMPREF1534_01254 | Not Available | Negative | 1431805 - 1433511 | 61976.5 |
| hypothetical protein | HMPREF1534_01255 | Not Available | Negative | 1433851 - 1433991 | 5294.38 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


