Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_01236 | Not Available | Positive | 1412002 - 1412304 | 11837.3 |
| hypothetical protein | HMPREF1534_01237 | Not Available | Negative | 1412255 - 1412404 | 5659.89 |
| hypothetical protein | HMPREF1534_01238 | Not Available | Negative | 1412417 - 1413142 | 27526.8 |
| hypothetical protein | HMPREF1534_01239 | Not Available | Negative | 1413149 - 1414024 | 32146.8 |
| chlorophyll synthesis pathway protein bchc | HMPREF1534_01240 | Not Available | Negative | 1414093 - 1415136 | 37503.7 |
| sugar (glycoside-pentoside-hexuronide) transporter | HMPREF1534_01241 | Not Available | Negative | 1415160 - 1417502 | 87559.6 |
| hypothetical protein | HMPREF1534_01242 | Not Available | Positive | 1417686 - 1418690 | 37994.1 |
| hypothetical protein | HMPREF1534_01243 | Not Available | Negative | 1418945 - 1419400 | 17391.2 |
| hypothetical protein | HMPREF1534_01244 | Not Available | Negative | 1419455 - 1420414 | 36170.5 |
| hypothetical protein | HMPREF1534_01245 | Not Available | Negative | 1420473 - 1422260 | 69821.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


