Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| conjugative transposon tram protein | HMPREF1534_01206 | Not Available | Negative | 1380404 - 1381642 | 46039.7 |
| hypothetical protein | HMPREF1534_01207 | Not Available | Negative | 1381639 - 1382130 | 18714.6 |
| conjugative transposon trak protein | HMPREF1534_01208 | Not Available | Negative | 1382152 - 1382748 | 22792.6 |
| hypothetical protein | HMPREF1534_01209 | Not Available | Negative | 1382767 - 1383915 | 41366.2 |
| hypothetical protein | HMPREF1534_01210 | Not Available | Negative | 1383947 - 1384633 | 26941.4 |
| hypothetical protein | HMPREF1534_01211 | Not Available | Negative | 1384623 - 1385321 | 26029.8 |
| hypothetical protein | HMPREF1534_01212 | Not Available | Negative | 1385336 - 1386073 | 27495.7 |
| trag family conjugation system atpase | HMPREF1534_01213 | Not Available | Negative | 1386061 - 1388901 | 109913.0 |
| hypothetical protein | HMPREF1534_01214 | Not Available | Negative | 1388918 - 1389208 | 10514.4 |
| hypothetical protein | HMPREF1534_01215 | Not Available | Negative | 1389238 - 1389636 | 14226.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


